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GEO accession:
Sample GSM136403
Query DataSets for GSM136403
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #16
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 16
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIA, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
11.07603911
1053_at
5.734193404
117_at
6.617388454
121_at
8.250139415
1255_g_at
4.195810549
1294_at
8.701767188
1316_at
6.680321342
1320_at
4.844866159
1405_i_at
6.043201306
1431_at
4.449101905
1438_at
6.726496257
1487_at
7.379019699
1494_f_at
6.771568004
1598_g_at
9.593921944
160020_at
7.747102953
1729_at
8.199102227
1773_at
5.278174998
177_at
5.205882334
179_at
8.779766161
1861_at
6.379120271
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136403.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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