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GEO accession:
Sample GSM136398
Query DataSets for GSM136398
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #14
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 14
race: European American
tnm_stage: IIIA
er_status: N/A
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: U, Her2Neu: U, Stage: IIIA, Cyclin E: unkown
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.99274217
1053_at
5.801826267
117_at
6.175786708
121_at
8.382655323
1255_g_at
4.250711703
1294_at
8.222114799
1316_at
6.769244297
1320_at
4.781916054
1405_i_at
6.682772644
1431_at
4.077349111
1438_at
6.859390037
1487_at
7.277277518
1494_f_at
6.62666985
1598_g_at
9.894404017
160020_at
7.786616791
1729_at
8.396332251
1773_at
5.247722027
177_at
5.226099262
179_at
8.861017089
1861_at
5.815860767
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136398.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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