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Sample GSM136395 Query DataSets for GSM136395
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #9
Sample type RNA
 
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Alive
patient_id: 9
race: European American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIA, Cyclin E: POS
Data processing RMA
 
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Lab LHC
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Relations
Reanalyzed by GSE47561

Data table header descriptions
ID_REF Affy ID
VALUE RMA log 2 expression levels

Data table
ID_REF VALUE
1007_s_at 10.81232146
1053_at 5.751671922
117_at 6.740114938
121_at 8.47137279
1255_g_at 4.088898616
1294_at 8.015751638
1316_at 6.491100161
1320_at 4.870513976
1405_i_at 7.19168209
1431_at 4.411404562
1438_at 7.138143589
1487_at 7.692436353
1494_f_at 6.807176067
1598_g_at 9.736532092
160020_at 8.028034018
1729_at 7.941323502
1773_at 5.385110584
177_at 5.139268715
179_at 8.990415018
1861_at 5.285911017

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM136395.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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