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GEO accession:
Sample GSM136393
Query DataSets for GSM136393
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #8
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 8
race: European American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIA, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.64357044
1053_at
5.910839968
117_at
6.15931869
121_at
8.255712841
1255_g_at
4.059528703
1294_at
8.071410648
1316_at
6.442351559
1320_at
4.842088041
1405_i_at
7.368891129
1431_at
4.331842212
1438_at
7.060154628
1487_at
7.37516157
1494_f_at
6.384036464
1598_g_at
9.519181673
160020_at
7.540669664
1729_at
8.126814258
1773_at
5.208866365
177_at
5.070093494
179_at
8.506399577
1861_at
5.925953741
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136393.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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