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GEO accession:
Sample GSM136387
Query DataSets for GSM136387
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #2
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 2
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIA, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.05554317
1053_at
5.795593772
117_at
6.442549227
121_at
8.251293442
1255_g_at
4.212023418
1294_at
8.745971655
1316_at
6.55077548
1320_at
4.804065739
1405_i_at
9.005144311
1431_at
4.117127214
1438_at
6.540321711
1487_at
7.589276467
1494_f_at
6.811964325
1598_g_at
10.29997189
160020_at
7.738208849
1729_at
8.222581536
1773_at
5.251834565
177_at
5.210124761
179_at
8.722439926
1861_at
5.458707459
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136387.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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