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GEO accession:
Sample GSM136386
Query DataSets for GSM136386
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #1
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 1
race: European American
tnm_stage: I
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: I, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.48189223
1053_at
5.671814482
117_at
6.87252215
121_at
8.580717222
1255_g_at
4.223000149
1294_at
8.032890891
1316_at
7.383975555
1320_at
4.734285195
1405_i_at
6.447317466
1431_at
4.123052818
1438_at
6.414841188
1487_at
7.71343115
1494_f_at
6.70458106
1598_g_at
9.425471405
160020_at
7.709866706
1729_at
8.505299483
1773_at
5.232613501
177_at
5.678392493
179_at
8.685678486
1861_at
5.896107357
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136386.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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