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GEO accession:
Sample GSM136382
Query DataSets for GSM136382
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #46
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Alive
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIIA, Clinical IBC: No
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.7141886
1053_at
5.567230959
117_at
6.210419982
121_at
8.32521829
1255_g_at
4.255365774
1294_at
7.426742267
1316_at
6.71756938
1320_at
5.19380991
1405_i_at
6.60471179
1431_at
4.308110581
1438_at
7.149400588
1487_at
7.196744063
1494_f_at
6.960340078
1598_g_at
9.976793379
160020_at
7.849736643
1729_at
7.956185516
1773_at
5.189797807
177_at
5.227981399
179_at
8.72777973
1861_at
5.427441218
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136382.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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