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GEO accession:
Sample GSM136376
Query DataSets for GSM136376
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #40
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Deceased
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIIA, Clinical IBC: No
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.56937061
1053_at
5.706089263
117_at
6.588637151
121_at
8.464933703
1255_g_at
4.132781545
1294_at
8.103272614
1316_at
6.804145092
1320_at
5.169651157
1405_i_at
7.721566357
1431_at
4.129497257
1438_at
6.655623697
1487_at
7.40072785
1494_f_at
6.741426735
1598_g_at
9.513518479
160020_at
7.68639777
1729_at
8.333728254
1773_at
5.335933026
177_at
5.245557705
179_at
8.73355978
1861_at
5.748477556
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136376.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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