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GEO accession:
Sample GSM136368
Query DataSets for GSM136368
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #28
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 28
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.05710094
1053_at
5.083257219
117_at
6.516452043
121_at
8.070501586
1255_g_at
3.989585104
1294_at
7.515531854
1316_at
6.340364054
1320_at
4.528721241
1405_i_at
6.138383105
1431_at
3.651479989
1438_at
7.078588467
1487_at
7.128825272
1494_f_at
6.224991416
1598_g_at
10.20465776
160020_at
7.572072561
1729_at
8.227482646
1773_at
5.134135513
177_at
4.936986514
179_at
8.363641168
1861_at
5.548360926
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136368.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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