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GEO accession:
Sample GSM136361
Query DataSets for GSM136361
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #22
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 22
race: European American
tnm_stage: IIB
er_status: POS
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.791769874
1053_at
4.961437437
117_at
6.352029843
121_at
7.92863725
1255_g_at
3.948773186
1294_at
7.555783813
1316_at
6.573697053
1320_at
4.630854951
1405_i_at
5.822717454
1431_at
3.764912941
1438_at
6.300134516
1487_at
7.089432584
1494_f_at
6.312714977
1598_g_at
9.469971793
160020_at
7.243775138
1729_at
7.810366785
1773_at
4.964625332
177_at
5.004244567
179_at
8.458917519
1861_at
5.752758558
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136361.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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