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GEO accession:
Sample GSM136349
Query DataSets for GSM136349
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #13
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 13
race: European American
tnm_stage: IIB
er_status: POS
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
8.891833915
1053_at
4.827622841
117_at
6.292980944
121_at
7.855916914
1255_g_at
3.936538799
1294_at
8.022996705
1316_at
6.869450776
1320_at
4.518592567
1405_i_at
5.967329659
1431_at
3.829185732
1438_at
6.265513854
1487_at
7.056976391
1494_f_at
6.436274609
1598_g_at
10.86866738
160020_at
7.53208582
1729_at
8.002387472
1773_at
4.89852603
177_at
5.480962323
179_at
8.358851887
1861_at
5.638727175
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136349.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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