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GEO accession:
Sample GSM136342
Query DataSets for GSM136342
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #5
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 5
race: European American
tnm_stage: IIA
er_status: POS
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIA
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.57258686
1053_at
4.919243526
117_at
6.423982738
121_at
7.697982002
1255_g_at
4.021963626
1294_at
8.778515029
1316_at
6.858026135
1320_at
4.520548145
1405_i_at
5.429419243
1431_at
3.845579002
1438_at
6.288566078
1487_at
7.062585861
1494_f_at
6.349153472
1598_g_at
11.80422619
160020_at
7.455064934
1729_at
8.420912247
1773_at
5.057143731
177_at
4.776403805
179_at
8.383126798
1861_at
6.015516442
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136342.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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