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GEO accession:
Sample GSM136330
Query DataSets for GSM136330
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #42
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Alive
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIIB, Clinical IBC: Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.278780316
1053_at
5.326392162
117_at
6.544584754
121_at
8.233756293
1255_g_at
3.998892981
1294_at
7.699998225
1316_at
6.47412502
1320_at
4.747658382
1405_i_at
7.746068144
1431_at
3.901781727
1438_at
6.41512718
1487_at
7.14035537
1494_f_at
6.483811408
1598_g_at
9.647799369
160020_at
7.503580061
1729_at
8.183298819
1773_at
5.070912764
177_at
5.191734996
179_at
8.506329594
1861_at
5.363277438
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136330.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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