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GEO accession:
Sample GSM136327
Query DataSets for GSM136327
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #38
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Alive
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: NEG, Stage: IIB, Clinical IBC:Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.399542196
1053_at
4.84929333
117_at
6.083273169
121_at
7.894658801
1255_g_at
3.96324647
1294_at
8.363973249
1316_at
7.064784649
1320_at
4.44699592
1405_i_at
6.910617467
1431_at
3.849219566
1438_at
6.359686368
1487_at
7.166530113
1494_f_at
6.307733667
1598_g_at
10.41183159
160020_at
7.457436099
1729_at
8.021444468
1773_at
4.626418047
177_at
5.094445127
179_at
8.087833596
1861_at
5.340937269
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136327.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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