|
| Status |
Public on Oct 05, 2014 |
| Title |
LU500 |
| Sample type |
genomic |
| |
|
| Source name |
Lung tumor
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: lung carcinomas
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA from fresh frozen lung tumor/normal tissue was extracted using Allprep (Qiagen).
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol.
|
| |
|
| Hybridization protocol |
Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using High Scan SQ using the standard recommended Illumina scanner setting.
|
| Data processing |
Signal intensities were obtained from GenomeStudio (Illumina), converted to beta-values, filtered, and normalized to remove biases between Infinium I and II probes
|
| |
|
| Submission date |
Mar 19, 2014 |
| Last update date |
Oct 05, 2014 |
| Contact name |
Johan Staaf |
| Organization name |
SCIBLU - Swegene Centre for Integrative Biology at Lund University
|
| Street address |
Medicon Village
|
| City |
Lund |
| ZIP/Postal code |
SE-223 81 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE56044 |
Genome-wide DNA methylation analysis of lung carcinoma |
| GSE60645 |
Genome-wide DNA methylation and expression analysis of lung carcinoma |
|
