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Sample GSM1325163 Query DataSets for GSM1325163
Status Public on Aug 04, 2014
Title OSKM_d42_2
Sample type RNA
 
Source name TRA-1-60 (+) cells on day 42
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 42
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
 
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 42
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
 
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
E-mail(s) kazu@cira.kyoto-u.ac.jp
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
(+)E1A_r60_1 10.130777
(+)E1A_r60_3 -6.817313
(+)E1A_r60_a104 -6.266492
(+)E1A_r60_a107 -2.8468418
(+)E1A_r60_a135 0.5067253
(+)E1A_r60_a20 1.7944841
(+)E1A_r60_a22 3.3794708
(+)E1A_r60_a97 5.715598
(+)E1A_r60_n11 7.6033287
(+)E1A_r60_n9 8.445791
3xSLv1 -6.89528
A_19_P00315452 1.1657257
A_19_P00315459 -1.58604
A_19_P00315469 -6.941443
A_19_P00315473 -6.677454
A_19_P00315482 -4.396927
A_19_P00315490 -6.8433647
A_19_P00315492 -5.410717
A_19_P00315493 -3.7696595
A_19_P00315496 -7.147963

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.




Supplementary file Size Download File type/resource
GSM1325163_OSKM_d42_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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