|
| Status |
Public on Jan 28, 2014 |
| Title |
genomic DNA from pituitary macroadenoma Sample 19 |
| Sample type |
genomic |
| |
|
| Source name |
pituitary macroadenoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: pituitary macroadenoma
subtype: NFA
knosp grade: 3
age: 31
gender: female
tumor type: invasive
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA purification was processed using DNeasy Blood & Tissue kit (Qiagen) according to the standard protocols of the manufacturer.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
One microgram of bisulphite converted DNA per sample was used for genome-scale DNA methylation profiling, which was performed in the USC Epigenome Center using the Illumina Infinium HumanMethylation450 (HM450) Beadchip platform,
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
d9988
female, invasive, pituitary
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Jan 27, 2014 |
| Last update date |
Jan 28, 2014 |
| Contact name |
Chao Ling |
| E-mail(s) |
chaoling1024@gmail.com
|
| Organization name |
University of Southern California
|
| Department |
Zilkha Neurogenetic Institute
|
| Lab |
Translational Neuroscience
|
| Street address |
1501 San Pablo street
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90089 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE54415 |
Genome-Scale Profiling of DNA Methylation in Sporadic Pituitary Macroadenomas: Association with Tumor Invasion and Histopathological Subtype |
|
