NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1282789 Query DataSets for GSM1282789
Status Public on Dec 09, 2013
Title X6055432089_R02C02_genomic DNA from whole blood_array
Sample type genomic
 
Source name whole blood
Organism Homo sapiens
Characteristics individual: Family 7 monozygotic twin 1
gender: Female
pain temperature: 45
age: 62.75428
medip-seq id: 182718
450k chip: 6055432089
order on 450k chip: R02C02
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from whole blood samples
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Family 7 monozygotic twin 1
Data processing BeadStudio software for 450k data.
 
Submission date Dec 09, 2013
Last update date Dec 09, 2013
Contact name Jordana Bell
E-mail(s) jordana.bell@kcl.ac.uk
Organization name King's College London
Department Department of Twin Research and Genetic Epidemiology
Street address St Thomas' Hospital, Westminster Bridge Rd
City London
ZIP/Postal code SE1 7EH
Country United Kingdom
 
Platform ID GPL13534
Series (2)
GSE53128 Differential Methylation Of The TRPA1 Promoter In Pain Sensitivity: DNA methylation 450k array
GSE53130 Differential Methylation Of The TRPA1 Promoter In Pain Sensitivity

Data table header descriptions
ID_REF
VALUE Average Beta
Detection.Pval

Data table
ID_REF VALUE Detection.Pval
cg00000029 0.4835464 0
cg00000108 0.9225731 0
cg00000109 0.8805716 0
cg00000165 0.1798715 0
cg00000236 0.6869884 0
cg00000289 0.7149261 0
cg00000292 0.8190663 0
cg00000321 0.3245577 0
cg00000363 0.3528374 0
cg00000622 0.02916606 0
cg00000658 0.7635255 0
cg00000714 0.1823303 0
cg00000721 0.9110883 0
cg00000734 0.06882632 0
cg00000769 0.08077179 0
cg00000807 0.8297616 0
cg00000884 0.8221946 0
cg00000905 0.07136747 0
cg00000924 0.5394788 0
cg00000948 0.8950831 0

Total number of rows: 485577

Table truncated, full table size 10997 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap