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GEO accession:
Sample GSM1275038
Query DataSets for GSM1275038
Status
Public on Feb 19, 2014
Title
placenta-rep47
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7800246137_R01C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.812214036813083
cg14008030
0.684348794958718
cg12045430
0.177553798947995
cg20826792
0.202048352083012
cg00381604
0.0973483353491996
cg20253340
0.41128499431088
cg21870274
0.304564112747956
cg03130891
0.0687201487729625
cg24335620
0.785697272230326
cg16162899
0.700370404692588
cg17149495
0.785028158722263
cg22802167
0.823474710482144
cg24669183
0.716464878196268
cg17308840
0.345476578520323
cg17866181
0.865783554605038
cg24159721
0.14829042920813
cg15174812
0.3142815534131
cg08477687
0.443539864799363
cg00034556
0.268548427992907
cg00645010
0.108312540833832
Total number of rows:
485512
Table truncated, full table size
13799 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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