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GEO accession:
Sample GSM1275032
Query DataSets for GSM1275032
Status
Public on Feb 19, 2014
Title
placenta-rep41
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7512578030_R02C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.814900693829491
cg14008030
0.717749254693915
cg12045430
0.178251318711139
cg20826792
0.206471463692816
cg00381604
0.127327906397863
cg20253340
0.399354518443121
cg21870274
0.292405097497925
cg03130891
0.101237977556019
cg24335620
0.793735212975903
cg16162899
0.705027490469816
cg17149495
0.7629216263925
cg22802167
0.835544858557348
cg24669183
0.699363009109172
cg17308840
0.365105722384315
cg17866181
0.888879488097316
cg24159721
0.124548872947499
cg15174812
0.30704237795206
cg08477687
0.392640651900731
cg00034556
0.28468123547173
cg00645010
0.105576765201108
Total number of rows:
485512
Table truncated, full table size
13799 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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