GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1275029
Query DataSets for GSM1275029
Status
Public on Feb 19, 2014
Title
placenta-rep38
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7512578020_R04C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.804364450085012
cg14008030
0.7112836344579
cg12045430
0.147183376956359
cg20826792
0.219540967539913
cg00381604
0.115625487069993
cg20253340
0.391079856538517
cg21870274
0.282883378093279
cg03130891
0.109645414375939
cg24335620
0.761216256581964
cg16162899
0.70353241271456
cg17149495
0.793186323924075
cg22802167
0.837189558048449
cg24669183
0.716060411004317
cg17308840
0.345930749173331
cg17866181
0.879796029701769
cg24159721
0.13688505647719
cg15174812
0.326536773654718
cg08477687
0.374378594669551
cg00034556
0.278460988175536
cg00645010
0.110302686013594
Total number of rows:
485512
Table truncated, full table size
13798 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
