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GEO accession:
Sample GSM1275023
Query DataSets for GSM1275023
Status
Public on Feb 19, 2014
Title
placenta-rep32
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7512560056_R06C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.835747283003952
cg14008030
0.697085472791948
cg12045430
0.162860020881243
cg20826792
0.199325335970653
cg00381604
0.182087651501844
cg20253340
0.43556745925059
cg21870274
0.315309987244929
cg03130891
0.141575234191552
cg24335620
0.725561172574908
cg16162899
0.616597129726821
cg17149495
0.780244932901586
cg22802167
0.840437722373521
cg24669183
0.713009986608244
cg17308840
0.365214322633539
cg17866181
0.86529310325673
cg24159721
0.168782461828911
cg15174812
0.345709586626809
cg08477687
0.441301129716172
cg00034556
0.279750806299742
cg00645010
0.114557963587436
Total number of rows:
485512
Table truncated, full table size
13796 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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