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GEO accession:
Sample GSM1275014
Query DataSets for GSM1275014
Status
Public on Feb 19, 2014
Title
placenta-rep23
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6929671068_R05C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.813130845095566
cg14008030
0.706363619649573
cg12045430
0.180140492293568
cg20826792
0.24639476716605
cg00381604
0.151496018755037
cg20253340
0.431106615137408
cg21870274
0.329829104508617
cg03130891
0.107895149636012
cg24335620
0.754874883944054
cg16162899
0.663754513649839
cg17149495
0.771897982761728
cg22802167
0.844172977078589
cg24669183
0.706656572392116
cg17308840
0.355044334888401
cg17866181
0.86597728380306
cg24159721
0.161878675071369
cg15174812
0.267918928976337
cg08477687
0.336425458960013
cg00034556
0.283353433843846
cg00645010
0.10838012246662
Total number of rows:
485512
Table truncated, full table size
13797 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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