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GEO accession:
Sample GSM1275013
Query DataSets for GSM1275013
Status
Public on Feb 19, 2014
Title
placenta-rep22
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6929671028_R05C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.814466481315687
cg14008030
0.728699057749633
cg12045430
0.165978817016415
cg20826792
0.219312311405
cg00381604
0.114449194281894
cg20253340
0.410351679628921
cg21870274
0.319934465383159
cg03130891
0.121647535719201
cg24335620
0.79518799241258
cg16162899
0.651155159534735
cg17149495
0.777535607481373
cg22802167
0.847803017521486
cg24669183
0.730738939157835
cg17308840
0.348456508497605
cg17866181
0.881636762702243
cg24159721
0.136029584509644
cg15174812
0.324883572651039
cg08477687
0.325306147890619
cg00034556
0.308533500189816
cg00645010
0.104368521527287
Total number of rows:
485512
Table truncated, full table size
13799 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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