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GEO accession:
Sample GSM1275012
Query DataSets for GSM1275012
Status
Public on Feb 19, 2014
Title
placenta-rep21
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6929671021_R06C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.820488078959225
cg14008030
0.6999587922925
cg12045430
0.204831946309381
cg20826792
0.248069523180555
cg00381604
0.12078162124203
cg20253340
0.4134128667204
cg21870274
0.32657290774045
cg03130891
0.160826593621961
cg24335620
0.752341607816777
cg16162899
0.666790016370973
cg17149495
0.798681226094259
cg22802167
0.837833973615078
cg24669183
0.703600060973872
cg17308840
0.368960979235946
cg17866181
0.860454132562836
cg24159721
0.176902075087688
cg15174812
0.348638286784868
cg08477687
0.355101891689892
cg00034556
0.28064627150479
cg00645010
0.137186371981652
Total number of rows:
485512
Table truncated, full table size
13796 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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