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Sample GSM1275008 Query DataSets for GSM1275008
Status Public on Feb 19, 2014
Title placenta-rep17
Sample type genomic
 
Source name placenta
Organism Homo sapiens
Characteristics tissue: placenta
Treatment protocol N/A
Growth protocol N/A
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description 6285609061_R02C02
Data processing minfi, Bioconductor, R
 
Submission date Nov 25, 2013
Last update date Feb 19, 2014
Contact name Martin Aryee
E-mail(s) aryee.martin@mgh.harvard.edu
Organization name Massachusetts General Hospital
Department Pathology
Street address 149 13th Street
City Charlestown
State/province MA
ZIP/Postal code 02129
Country USA
 
Platform ID GPL13534
Series (1)
GSE52731 DNA methylation profiles of liver and placenta technical replicates

Data table header descriptions
ID_REF
VALUE minfi preprocessQuantile Beta

Data table
ID_REF VALUE
cg13869341 0.822376356829768
cg14008030 0.718168441715955
cg12045430 0.181579240229706
cg20826792 0.199744176196062
cg00381604 0.101552421365325
cg20253340 0.367674102707005
cg21870274 0.305985268923416
cg03130891 0.114536420002619
cg24335620 0.781202797648954
cg16162899 0.733486844035083
cg17149495 0.790638076050663
cg22802167 0.84388570278621
cg24669183 0.694565256199527
cg17308840 0.351055771180337
cg17866181 0.870250214162702
cg24159721 0.130937596932436
cg15174812 0.289625953502698
cg08477687 0.373056102008874
cg00034556 0.260055896027443
cg00645010 0.109163439296359

Total number of rows: 485512

Table truncated, full table size 13799 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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