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GEO accession:
Sample GSM1275008
Query DataSets for GSM1275008
Status
Public on Feb 19, 2014
Title
placenta-rep17
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6285609061_R02C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.822376356829768
cg14008030
0.718168441715955
cg12045430
0.181579240229706
cg20826792
0.199744176196062
cg00381604
0.101552421365325
cg20253340
0.367674102707005
cg21870274
0.305985268923416
cg03130891
0.114536420002619
cg24335620
0.781202797648954
cg16162899
0.733486844035083
cg17149495
0.790638076050663
cg22802167
0.84388570278621
cg24669183
0.694565256199527
cg17308840
0.351055771180337
cg17866181
0.870250214162702
cg24159721
0.130937596932436
cg15174812
0.289625953502698
cg08477687
0.373056102008874
cg00034556
0.260055896027443
cg00645010
0.109163439296359
Total number of rows:
485512
Table truncated, full table size
13799 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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