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GEO accession:
Sample GSM1275004
Query DataSets for GSM1275004
Status
Public on Feb 19, 2014
Title
placenta-rep13
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6264496085_R01C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.82501386043334
cg14008030
0.70564233346022
cg12045430
0.187928916225726
cg20826792
0.209335562206184
cg00381604
0.137233242422391
cg20253340
0.435294869057396
cg21870274
0.329040061317347
cg03130891
0.165746294552124
cg24335620
0.762000579388774
cg16162899
0.6209993044142
cg17149495
0.756550878369279
cg22802167
0.845996661229241
cg24669183
0.736620545948558
cg17308840
0.35916388924634
cg17866181
0.87170798581511
cg24159721
0.140458548498794
cg15174812
0.285372965339242
cg08477687
0.372637790043501
cg00034556
0.290366919296849
cg00645010
0.123392020911935
Total number of rows:
485512
Table truncated, full table size
13798 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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