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GEO accession:
Sample GSM1275002
Query DataSets for GSM1275002
Status
Public on Feb 19, 2014
Title
placenta-rep11
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6229050008_R04C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.824793474768787
cg14008030
0.71784500147994
cg12045430
0.137956741090698
cg20826792
0.21252600756303
cg00381604
0.112591403644317
cg20253340
0.389672693575173
cg21870274
0.295829108872446
cg03130891
0.14094309059826
cg24335620
0.77722549584211
cg16162899
0.628120890709695
cg17149495
0.799958794825776
cg22802167
0.845790777385431
cg24669183
0.731078922423971
cg17308840
0.380248646239286
cg17866181
0.881933656218587
cg24159721
0.141899778473962
cg15174812
0.346169638146382
cg08477687
0.395975250130322
cg00034556
0.283143018843618
cg00645010
0.118651262676515
Total number of rows:
485512
Table truncated, full table size
13799 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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