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GEO accession:
Sample GSM1275001
Query DataSets for GSM1275001
Status
Public on Feb 19, 2014
Title
placenta-rep10
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6229041161_R05C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.837454021665545
cg14008030
0.7214327542133
cg12045430
0.169181416472752
cg20826792
0.179262617888121
cg00381604
0.146487277169578
cg20253340
0.406606999232817
cg21870274
0.323974724270831
cg03130891
0.168387836567054
cg24335620
0.771932166450404
cg16162899
0.717029228248323
cg17149495
0.780173130766731
cg22802167
0.854631825751401
cg24669183
0.693047428786808
cg17308840
0.387718345179781
cg17866181
0.882305185052959
cg24159721
0.151327600800809
cg15174812
0.301245104185626
cg08477687
0.476912198477244
cg00034556
0.289932354949195
cg00645010
0.12562784457906
Total number of rows:
485512
Table truncated, full table size
13797 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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