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GEO accession:
Sample GSM1274996
Query DataSets for GSM1274996
Status
Public on Feb 19, 2014
Title
placenta-rep5
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
5730504011_R06C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.81355831237409
cg14008030
0.689173458994387
cg12045430
0.208067395184814
cg20826792
0.140915192852716
cg00381604
0.128053534860208
cg20253340
0.495767794492554
cg21870274
0.366675175670161
cg03130891
0.222778148635424
cg24335620
0.782403992860413
cg16162899
0.590728830236087
cg17149495
0.786972769845648
cg22802167
0.839401807142535
cg24669183
0.686934802425541
cg17308840
0.394581573409352
cg17866181
0.827372935987694
cg24159721
0.201563525038268
cg15174812
0.334746196842117
cg08477687
0.207676569476427
cg00034556
0.327638471706919
cg00645010
0.128896964197803
Total number of rows:
485512
Table truncated, full table size
13792 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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