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GEO accession:
Sample GSM1274993
Query DataSets for GSM1274993
Status
Public on Feb 19, 2014
Title
placenta-rep2
Sample type
genomic
Source name
placenta
Organism
Homo sapiens
Characteristics
tissue: placenta
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
5730192014_R02C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.841857897905934
cg14008030
0.696070290841464
cg12045430
0.167036486117412
cg20826792
0.231884069491584
cg00381604
0.105646390276446
cg20253340
0.41893308702982
cg21870274
0.318820734436933
cg03130891
0.170109326919063
cg24335620
0.776864391875532
cg16162899
0.707123038381234
cg17149495
0.819753722233122
cg22802167
0.845565990710948
cg24669183
0.722463402677069
cg17308840
0.350021399548371
cg17866181
0.869949792794452
cg24159721
0.158295977643198
cg15174812
0.345064152065968
cg08477687
0.318803329102319
cg00034556
0.28925900731496
cg00645010
0.10404034310816
Total number of rows:
485512
Table truncated, full table size
13799 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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