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GEO accession:
Sample GSM1274986
Query DataSets for GSM1274986
Status
Public on Feb 19, 2014
Title
liver-rep65
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
8942289122_R05C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.774500506634189
cg14008030
0.580530803670105
cg12045430
0.125769788150655
cg20826792
0.224195220403733
cg00381604
0.134688503978228
cg20253340
0.422888025144046
cg21870274
0.5988132395745
cg03130891
0.0522819987530061
cg24335620
0.664481907825079
cg16162899
0.823950483964459
cg17149495
0.698054007656756
cg22802167
0.867969088593422
cg24669183
0.842026502224009
cg17308840
0.278817136178334
cg17866181
0.831980367169181
cg24159721
0.131776325521716
cg15174812
0.137171443006478
cg08477687
0.534043021234564
cg00034556
0.255201440365771
cg00645010
0.0930699944581322
Total number of rows:
485512
Table truncated, full table size
13802 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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