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GEO accession:
Sample GSM1274963
Query DataSets for GSM1274963
Status
Public on Feb 19, 2014
Title
liver-rep42
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7512560060_R05C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.772989959015164
cg14008030
0.619763965546382
cg12045430
0.126331040267969
cg20826792
0.311554390846503
cg00381604
0.0608893343935337
cg20253340
0.45746274868892
cg21870274
0.565570600442792
cg03130891
0.0490062622655555
cg24335620
0.689838737550735
cg16162899
0.851486567653161
cg17149495
0.690618683828412
cg22802167
0.847393542207156
cg24669183
0.781236095233865
cg17308840
0.265866953534258
cg17866181
0.825984661768865
cg24159721
0.134360308528847
cg15174812
0.153126119302516
cg08477687
0.250000659472264
cg00034556
0.218780653773715
cg00645010
0.0703024729093513
Total number of rows:
485512
Table truncated, full table size
13802 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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