GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1274961
Query DataSets for GSM1274961
Status
Public on Feb 19, 2014
Title
liver-rep40
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7512560028_R03C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.756376110300979
cg14008030
0.593521127335626
cg12045430
0.1347963944446
cg20826792
0.317674553696597
cg00381604
0.108765712113845
cg20253340
0.465474912545141
cg21870274
0.572411872775152
cg03130891
0.0500354450743534
cg24335620
0.669772072553259
cg16162899
0.833735289811567
cg17149495
0.713837328003911
cg22802167
0.836829461617172
cg24669183
0.775473831343938
cg17308840
0.291614829067714
cg17866181
0.867808945886601
cg24159721
0.161731649915567
cg15174812
0.166843269385541
cg08477687
0.218212610525561
cg00034556
0.217547445083018
cg00645010
0.0807042155856496
Total number of rows:
485512
Table truncated, full table size
13800 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
