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GEO accession:
Sample GSM1274960
Query DataSets for GSM1274960
Status
Public on Feb 19, 2014
Title
liver-rep39
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7512560009_R05C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.765928871453353
cg14008030
0.618643079093582
cg12045430
0.10052086686128
cg20826792
0.276168128234901
cg00381604
0.0962805438248618
cg20253340
0.455600259827176
cg21870274
0.598652566820407
cg03130891
0.0491839812099056
cg24335620
0.664472377610031
cg16162899
0.85613956054183
cg17149495
0.700732065119026
cg22802167
0.846789610207931
cg24669183
0.769527962490989
cg17308840
0.264147967456839
cg17866181
0.877678026380761
cg24159721
0.141055975249169
cg15174812
0.145720947120347
cg08477687
0.250259321665123
cg00034556
0.218226292929855
cg00645010
0.0792488011439273
Total number of rows:
485512
Table truncated, full table size
13802 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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