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GEO accession:
Sample GSM1274957
Query DataSets for GSM1274957
Status
Public on Feb 19, 2014
Title
liver-rep36
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7497398128_R06C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.774602617841513
cg14008030
0.588600829456509
cg12045430
0.101304114757227
cg20826792
0.362683791452428
cg00381604
0.106246054885993
cg20253340
0.455121737791921
cg21870274
0.576809571196355
cg03130891
0.0836751342275367
cg24335620
0.659504985183907
cg16162899
0.906071296420883
cg17149495
0.752199896941765
cg22802167
0.847880657309791
cg24669183
0.792453864542343
cg17308840
0.299968561151556
cg17866181
0.90605914928783
cg24159721
0.166985962259345
cg15174812
0.175214687551031
cg08477687
0.327024007756676
cg00034556
0.260816954202328
cg00645010
0.0969679926319388
Total number of rows:
485512
Table truncated, full table size
13798 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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