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GEO accession:
Sample GSM1274956
Query DataSets for GSM1274956
Status
Public on Feb 19, 2014
Title
liver-rep35
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7497398128_R04C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.785728166459422
cg14008030
0.627651209176611
cg12045430
0.142505577143028
cg20826792
0.325455726285962
cg00381604
0.146932357451505
cg20253340
0.437974420625873
cg21870274
0.584502658101778
cg03130891
0.0589744692151086
cg24335620
0.679935362207792
cg16162899
0.840899764785047
cg17149495
0.642970357299076
cg22802167
0.852964630252892
cg24669183
0.806488414515618
cg17308840
0.260026741315332
cg17866181
0.862570813785319
cg24159721
0.109970173369676
cg15174812
0.13851556610463
cg08477687
0.246344419159378
cg00034556
0.21232079623037
cg00645010
0.0706215905373432
Total number of rows:
485512
Table truncated, full table size
13802 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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