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GEO accession:
Sample GSM1274950
Query DataSets for GSM1274950
Status
Public on Feb 19, 2014
Title
liver-rep29
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6929671045_R03C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.774037850598404
cg14008030
0.605005518766419
cg12045430
0.144773727940143
cg20826792
0.314769222233409
cg00381604
0.157635400969874
cg20253340
0.448198531342402
cg21870274
0.616554498847035
cg03130891
0.0780681586901953
cg24335620
0.674578787944372
cg16162899
0.810387112286607
cg17149495
0.689686301523101
cg22802167
0.856168900414047
cg24669183
0.771218845531379
cg17308840
0.261154334389836
cg17866181
0.871339684821092
cg24159721
0.147458257545073
cg15174812
0.165136492814793
cg08477687
0.206216082881105
cg00034556
0.234018862001134
cg00645010
0.0766674244923116
Total number of rows:
485512
Table truncated, full table size
13801 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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