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GEO accession:
Sample GSM1274949
Query DataSets for GSM1274949
Status
Public on Feb 19, 2014
Title
liver-rep28
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6929671035_R04C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.753925148712176
cg14008030
0.628854448299425
cg12045430
0.151175324405597
cg20826792
0.30621731102773
cg00381604
0.155007958696563
cg20253340
0.463694246283789
cg21870274
0.588632755089393
cg03130891
0.0514959846872761
cg24335620
0.693980704146922
cg16162899
0.815433115313641
cg17149495
0.703658594654196
cg22802167
0.849684546276332
cg24669183
0.78919732145491
cg17308840
0.257365589501431
cg17866181
0.819380379636044
cg24159721
0.149576789176887
cg15174812
0.160724773558531
cg08477687
0.2341667403636
cg00034556
0.220432195486662
cg00645010
0.0724653399525601
Total number of rows:
485512
Table truncated, full table size
13802 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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