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GEO accession:
Sample GSM1274944
Query DataSets for GSM1274944
Status
Public on Feb 19, 2014
Title
liver-rep23
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6264496069_R04C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.774112050813755
cg14008030
0.615643925918624
cg12045430
0.181716166739852
cg20826792
0.337464563126621
cg00381604
0.139461197130717
cg20253340
0.464234221030729
cg21870274
0.579218235412726
cg03130891
0.0425798439670019
cg24335620
0.679224275575483
cg16162899
0.789208083706923
cg17149495
0.682486181993069
cg22802167
0.850980377054958
cg24669183
0.790509154498684
cg17308840
0.276533501174132
cg17866181
0.836487874753022
cg24159721
0.142353505471364
cg15174812
0.167263496340501
cg08477687
0.212287626092154
cg00034556
0.2344216947588
cg00645010
0.0803739905349945
Total number of rows:
485512
Table truncated, full table size
13801 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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