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GEO accession:
Sample GSM1274938
Query DataSets for GSM1274938
Status
Public on Feb 19, 2014
Title
liver-rep17
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
6229041042_R06C02
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.760136876518104
cg14008030
0.568153916050416
cg12045430
0.127042036013686
cg20826792
0.259868743394372
cg00381604
0.0861160209159984
cg20253340
0.44058983066157
cg21870274
0.588707069590409
cg03130891
0.0673664563756862
cg24335620
0.664075824764875
cg16162899
0.850918610053389
cg17149495
0.628379354144697
cg22802167
0.845602731908981
cg24669183
0.752396793887114
cg17308840
0.272595686555284
cg17866181
0.886400563099393
cg24159721
0.190621471832975
cg15174812
0.191064897733707
cg08477687
0.360757755142826
cg00034556
0.269836684495038
cg00645010
0.109512671656212
Total number of rows:
485512
Table truncated, full table size
13796 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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