NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1253174 Query DataSets for GSM1253174
Status Public on Aug 01, 2014
Title HCT116 3BKO 5-Aza-CdR D10_2
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Characteristics cell line: HCT116
genotype: DNMT3B KO
treatment: 5-Aza-CdR
time: D10
Treatment protocol Cells were treated with 5-Aza-CdR and RNA were collected at indicated time points after treatment.
Growth protocol Standard as recommended by ATCC
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description colorectal carcinoma cell line;HCT116 derivative cell lines with a genetic knockout of DNMT3B
replicate 2
Data processing The data was preprocessed by Bioconductor lumi package (version 2.12.0) and GenomeStudio.
 
Submission date Oct 28, 2013
Last update date Aug 01, 2014
Contact name Xiaojing Yang
E-mail(s) xiaojiny@usc.edu
Phone (323)865-0740
Organization name USC/Norris Comprehensive Cancer Center
Street address 1441 Eastlake Ave, Room 7336
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
 
Platform ID GPL10558
Series (2)
GSE51811 Gene Body Methylation Directly Increases Gene Expression and is a Therapeutic Target for Genes Upregulated in Cancer (gene expression)
GSE51815 Gene Body Methylation Directly Increases Gene Expression and is a Therapeutic Target for Genes Upregulated in Cancer

Data table header descriptions
ID_REF
VALUE It was vst transformed and quantile normalized.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343291 62978.11 0
ILMN_1343295 26299.63 0
ILMN_1651199 -25.46258 0.9597403
ILMN_1651209 11.01942 0.261039
ILMN_1651210 -7.51756 0.5883117
ILMN_1651221 27.93102 0.0987013
ILMN_1651228 18870.29 0
ILMN_1651229 642.6111 0
ILMN_1651230 -20.04847 0.8844156
ILMN_1651232 50.10458 0.02597403
ILMN_1651235 3.997683 0.3532467
ILMN_1651236 -8.516758 0.6181818
ILMN_1651237 3017.038 0
ILMN_1651238 1.83199 0.3857143
ILMN_1651249 -13.8891 0.761039
ILMN_1651253 148.6982 0.001298701
ILMN_1651254 1974.981 0
ILMN_1651259 52.11102 0.02597403
ILMN_1651260 -4.476349 0.5220779
ILMN_1651262 11250.99 0

Total number of rows: 47231

Table truncated, full table size 1378 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap