|
| Status |
Public on Aug 01, 2014 |
| Title |
HCT116 3BKO Ctrl_2 |
| Sample type |
RNA |
| |
|
| Source name |
Colon
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HCT116
genotype: DNMT3B KO
treatment: control
time: baseline
|
| Treatment protocol |
Cells were treated with 5-Aza-CdR and RNA were collected at indicated time points after treatment.
|
| Growth protocol |
Standard as recommended by ATCC
|
| Extracted molecule |
total RNA |
| Extraction protocol |
standard as recommended by illumina
|
| Label |
Cy3
|
| Label protocol |
standard as recommended by illumina
|
| |
|
| Hybridization protocol |
standard as recommended by illumina
|
| Scan protocol |
standard as recommended by illumina
|
| Description |
colorectal carcinoma cell line;HCT116 derivative cell lines with a genetic knockout of DNMT3B
replicate 2
|
| Data processing |
The data was preprocessed by Bioconductor lumi package (version 2.12.0) and GenomeStudio.
|
| |
|
| Submission date |
Oct 28, 2013 |
| Last update date |
Aug 01, 2014 |
| Contact name |
Xiaojing Yang |
| E-mail(s) |
xiaojiny@usc.edu
|
| Phone |
(323)865-0740
|
| Organization name |
USC/Norris Comprehensive Cancer Center
|
| Street address |
1441 Eastlake Ave, Room 7336
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90033 |
| Country |
USA |
| |
|
| Platform ID |
GPL10558 |
| Series (2) |
| GSE51811 |
Gene Body Methylation Directly Increases Gene Expression and is a Therapeutic Target for Genes Upregulated in Cancer (gene expression) |
| GSE51815 |
Gene Body Methylation Directly Increases Gene Expression and is a Therapeutic Target for Genes Upregulated in Cancer |
|
