|
Status |
Public on Nov 19, 2014 |
Title |
clone #11, pLVX, 1uM 6780, 28 days [8] |
Sample type |
genomic |
|
|
Source name |
clone #11, pLVX, 1uM 6780, 28 days
|
Organism |
Homo sapiens |
Characteristics |
construct: pLVX treatment: 1uM 6780 days: 28 clone_number: 11 barcode: 8221916163_R02C02 cell type: TF-1 cells
|
Treatment protocol |
Varies
|
Growth protocol |
Cell culture with varying growth times
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted using Qiagen DNeasy Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
8
|
Data processing |
BeadStudio software v3.2 was used to export data to Partek Genomics Suite Format
|
|
|
Submission date |
Oct 17, 2013 |
Last update date |
Nov 19, 2014 |
Contact name |
Andrew Kernytsky |
Organization name |
Agios
|
Street address |
38 Sidney St
|
City |
Cambridge |
State/province |
Massachusetts |
ZIP/Postal code |
02139 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE51352 |
IDH2 mutation induced histone and DNA hypermethylation is progressively reversed by small molecule inhibition |
|