|
Status |
Public on Sep 05, 2013 |
Title |
DH line, CFD02-092 |
Sample type |
genomic |
|
|
Source name |
leaf
|
Organism |
Zea mays |
Characteristics |
status: DH line maize population: Dent
|
Treatment protocol |
none
|
Growth protocol |
Plants grown in greenhouse or field.
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted from dried leaves using a modified CTAB protocol (modified from Saghai-Maroof et al. 1984, PNAS)
|
Label |
Cy3, Cy5
|
Label protocol |
Array hybridization and raw data processing was performed according to manufacturer’s instructions (Illumina).
|
|
|
Hybridization protocol |
Array hybridization and raw data processing was performed according to manufacturer’s instructions (Illumina).
|
Scan protocol |
Array hybridization and raw data processing was performed according to manufacturer’s instructions (Illumina).
|
Description |
Genomic DNA from maize was analyzed with the Illumina MaizeSNP50 BeadChip
|
Data processing |
Data processing was performed using GenomeStudio software 2011.1 (Illumina)(Genotyping Module v 1.9.4) using the clusterfile maizesnp50_b.egt available from Illumina.
|
|
|
Submission date |
Sep 03, 2013 |
Last update date |
Sep 05, 2013 |
Contact name |
Eva Bauer |
E-mail(s) |
e.bauer@tum.de
|
Phone |
++49 8161 715243
|
Organization name |
Technical University of Munich
|
Department |
Plant Breeding
|
Street address |
Liesel-Beckmann-Str. 2
|
City |
Freising |
ZIP/Postal code |
85354 |
Country |
Germany |
|
|
Platform ID |
GPL17677 |
Series (1) |
GSE50558 |
Intraspecific variation of recombination rate in maize |
|