|
| Status |
Public on Feb 06, 2014 |
| Title |
SI9188.2 |
| Sample type |
genomic |
| |
|
| Source name |
small intestine
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
tissue type: small intestine
disease state: normal
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from urine samples using phenol-chloroform method
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation45 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
genomic DNA from normal small intestine 8
|
| Data processing |
methylumi R package
|
| |
|
| Submission date |
Aug 30, 2013 |
| Last update date |
Feb 06, 2014 |
| Contact name |
Fides D Lay |
| E-mail(s) |
fidlay@ucla.edu
|
| Organization name |
UCLA
|
| Department |
MCDB
|
| Street address |
615 Charles E Young Drive South, BSRB 457
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE50475 |
Reprogramming of the Human Intestinal Epigenome by Surgical Tissue Transposition |
|
