|
Status |
Public on Feb 06, 2014 |
Title |
N5776 |
Sample type |
genomic |
|
|
Source name |
urothelium
|
Organism |
Homo sapiens |
Characteristics |
gender: Male tissue type: urothelium disease state: normal
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from urine samples using phenol-chloroform method
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation45 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
genomic DNA from normal urothelium 3
|
Data processing |
methylumi R package
|
|
|
Submission date |
Aug 30, 2013 |
Last update date |
Feb 06, 2014 |
Contact name |
Fides D Lay |
E-mail(s) |
fidlay@ucla.edu
|
Organization name |
UCLA
|
Department |
MCDB
|
Street address |
615 Charles E Young Drive South, BSRB 457
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE50475 |
Reprogramming of the Human Intestinal Epigenome by Surgical Tissue Transposition |
|