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Status |
Public on Oct 20, 2013 |
Title |
CCA_Tumor_Sample [00990196T] |
Sample type |
genomic |
|
|
Source name |
CCA_Tumor_Sample
|
Organism |
Homo sapiens |
Characteristics |
tissue type: CCA Tumor idh1/2 mutation status: WildType cca-type (ov or non-ov): Non-OV
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from cells using Qiagen Blood and Cell Culture DNA kit (Qiagen, CA)
|
Label |
Cy5 and Cy3
|
Label protocol |
According to manufacturer's protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation540 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using recommended Illumina scanner settings
|
Description |
Methylation profiling on IDH1/2 wild-type and mutant CCA tumors
|
Data processing |
GenomeStudio software was used to analyze raw Illumina BeadChip data and generate summary files containing average beta avalues.
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|
|
Submission date |
Aug 08, 2013 |
Last update date |
Oct 20, 2013 |
Contact name |
Weng Khong Lim |
E-mail(s) |
wengkhong.lim@duke-nus.edu.sg
|
Organization name |
National Cancer Centre Singapore
|
Department |
Department of Medical Sciences
|
Lab |
NCCS-VARI Translational Research Laboratory
|
Street address |
11 Hospital Drive
|
City |
Singapore |
State/province |
Singapore |
ZIP/Postal code |
169610 |
Country |
Singapore |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE49656 |
Distinct Mutational Patterns of Infection and Non-Infection-Related Bile Duct Cancers Revealed by Exome Sequencing |
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