|
| Status |
Public on Oct 20, 2013 |
| Title |
CCA_Tumor_Sample [19286759T] |
| Sample type |
genomic |
| |
|
| Source name |
CCA_Tumor_Sample
|
| Organism |
Homo sapiens |
| Characteristics |
tissue type: CCA Tumor
idh1/2 mutation status: Mutant
cca-type (ov or non-ov): Non-OV
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from cells using Qiagen Blood and Cell Culture DNA kit (Qiagen, CA)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
According to manufacturer's protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation540 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using recommended Illumina scanner settings
|
| Description |
Methylation profiling on IDH1/2 wild-type and mutant CCA tumors
|
| Data processing |
GenomeStudio software was used to analyze raw Illumina BeadChip data and generate summary files containing average beta avalues.
|
| |
|
| Submission date |
Aug 08, 2013 |
| Last update date |
Oct 20, 2013 |
| Contact name |
Weng Khong Lim |
| E-mail(s) |
wengkhong.lim@duke-nus.edu.sg
|
| Organization name |
National Cancer Centre Singapore
|
| Department |
Department of Medical Sciences
|
| Lab |
NCCS-VARI Translational Research Laboratory
|
| Street address |
11 Hospital Drive
|
| City |
Singapore |
| State/province |
Singapore |
| ZIP/Postal code |
169610 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE49656 |
Distinct Mutational Patterns of Infection and Non-Infection-Related Bile Duct Cancers Revealed by Exome Sequencing |
|
