|
| Status |
Public on Sep 02, 2014 |
| Title |
MDT-MB-138 |
| Sample type |
genomic |
| |
|
| Source name |
Primary medulloblastoma tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
age: 3
gender: M
histology: classic
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
|
| Label |
biotin/DNP
|
| Label protocol |
Illumina
|
| |
|
| Hybridization protocol |
Illumina
|
| Scan protocol |
Illumina iScan System
|
| Description |
Methylation data from a glioblastoma tumor sample
|
| Data processing |
Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
|
| |
|
| Submission date |
Jul 30, 2013 |
| Last update date |
Sep 02, 2014 |
| Contact name |
Marc Remke |
| E-mail(s) |
marcremke@gmail.com
|
| Organization name |
The Hospital for Sick Children
|
| Department |
Laboratory Medicine and Pathobiology
|
| Street address |
555 University Ave. Rm 1504
|
| City |
Toronto |
| ZIP/Postal code |
M5G 1X8 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE49377 |
Methylation profiling data from medulloblastoma tumor samples |
|
